Do you have multitrack software? Unless you can send digital audio directly from MD to computer, you'll lose all your start/stop points. To create tracks once the audio is in the computer, you'll need some decent audio software.
Or, you can drive yourself crazy recording one track at a time to the computer. Then you can use the CD burning software alone to create the CD.
Find some multitrack software! I use N-track studio, available over the net at http://www.fasoft.com . Good software, and DIRT cheap since he writes and sells the program himself. Don't be fooled by the price. It's powerful recording/editing/mixing software.
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Neil
Reality: A few moments of lucidity surrounded by insanity.